SMTL ID : 5dc9.1

CRYSTAL STRUCTURE OF MONOBODY AS25/ABL1 SH2 DOMAIN COMPLEX, CRYSTAL B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

hetero-1-1-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Y.30, L.31, S.33, S.34, R.111 Chain B: G.42, G.43, Y.47 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.33, A:S.34, A:S.34, B:G.42, B:G.42, B:Y.47 GOL.4: 7 residues within 4Å: Chain B: F.50, V.52, P.53, K.56, A.59, T.60 Ligands: GOL.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.56, B:T.60, B:T.60 Water bridges: B:T.58, B:T.60, B:T.60 GOL.5: 6 residues within 4Å: Chain B: Y.38, F.50, T.60, I.61, S.62 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.62, B:S.62 Water bridges: B:T.60 GOL.6: 1 residues within 4Å: Chain B: D.32 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.32 GOL.7: 3 residues within 4Å: Chain B: Y.33, E.51, P.53 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.51

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 2 residues within 4Å: Chain A: Y.63, I.101 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.63 IMD.3: 2 residues within 4Å: Chain A: A.27, Y.30 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojcik, J. et al., Allosteric Inhibition of Bcr-Abl Kinase by High Affinity Monobody Inhibitors Directed to the Src Homology 2 (SH2)-Kinase Interface. J.Biol.Chem. (2016)

Release Date

2016-03-02

Peptides

Tyrosine-protein kinase ABL1: A
AS25 monobody: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein kinase ABL1

AS25 monobody

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