SMTL ID : 5dcw.1

Iridoid synthase from Catharanthus roseus - ligand free structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.268, E.271, E.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.268, A:E.271, A:E.271, A:E.272 EDO.2: 5 residues within 4Å: Chain A: D.230, D.232, S.356, C.357, K.360 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.230, A:A.231, A:D.232, A:S.356 Water bridges: A:K.360 EDO.3: 6 residues within 4Å: Chain A: S.10, H.83, Q.117, A.242, V.243, K.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.10, A:Q.117, A:K.248, A:K.248 EDO.4: 5 residues within 4Å: Chain A: A.290, A.318, A.319, F.320, W.321 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.318, A:F.320 EDO.5: 3 residues within 4Å: Chain B: K.268, E.271, E.272 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.268, B:E.271 EDO.6: 5 residues within 4Å: Chain B: D.230, D.232, S.356, C.357, K.360 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.230, B:A.231, B:D.232, B:S.356 Water bridges: B:K.360 EDO.7: 6 residues within 4Å: Chain B: S.10, H.83, Q.117, A.242, V.243, K.248 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.10, B:Q.117, B:K.248, B:K.248 EDO.8: 5 residues within 4Å: Chain B: A.290, A.318, A.319, F.320, W.321 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.318, B:F.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kries, H. et al., Structural determinants of reductive terpene cyclization in iridoid biosynthesis. Nat.Chem.Biol. (2016)

Release Date

2015-10-28

Peptides

Iridoid synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Iridoid synthase

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