SMTL ID : 5det.1

X-ray structure of human RBPMS in complex with the RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x U- C- A- C- U: RNA (5'-R(P*UP*CP*AP*CP*U)-3')(Non-covalent)

U-C-A-C-U.1: 18 residues within 4Å: Chain B: F.14, S.16, L.41, K.43, T.45, K.47, Q.48, V.50, F.52, E.84, F.85, A.86, K.87, A.88, N.89, T.90, K.91, M.92 Protein-ligand interaction information (PLIP) not available

1 x U- C- A- C: RNA (5'-R(*UP*CP*AP*C)-3')(Non-covalent)

U-C-A-C.2: 14 residues within 4Å: Chain A: F.14, S.16, K.43, F.52, R.82, E.84, F.85, A.86, K.87, A.88, N.89, T.90, K.91, M.92 Protein-ligand interaction information (PLIP) not available

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: R.58 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.58 Salt bridges: A:R.58 SO4.4: 3 residues within 4Å: Chain A: K.65, E.84, F.85 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.85, A:F.85 Salt bridges: A:K.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teplova, M. et al., Structural basis underlying CAC RNA recognition by the RRM domain of dimeric RNA-binding protein RBPMS. Q. Rev. Biophys. (2016)

Release Date

2015-09-23

Peptides

RNA-binding protein with multiple splicing: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA-binding protein with multiple splicing