SMTL ID : 5dfb.1

Crystal structure of BRD2(BD2) mutant W370F in the free form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: R.78 Chain B: R.78 Ligands: NI.4 No protein-ligand interaction detected (PLIP) NI.4: 3 residues within 4Å: Chain A: R.78 Chain B: R.78 Ligands: NI.1 No protein-ligand interaction detected (PLIP)

2 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.2: 5 residues within 4Å: Chain A: S.6, L.9, K.10, N.13, M.62 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.10 2PE.5: 5 residues within 4Å: Chain B: S.6, L.9, K.10, N.13, M.62 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.10

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: Y.27, A.96, M.97, K.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.100, A:K.100 GOL.6: 4 residues within 4Å: Chain B: Y.27, A.96, M.97, K.100 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.100, B:K.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baud, M.G. et al., New Synthetic Routes to Triazolo-benzodiazepine Analogues: Expanding the Scope of the Bump-and-Hole Approach for Selective Bromo and Extra-Terminal (BET) Bromodomain Inhibition. J.Med.Chem. (2016)

Release Date

2015-11-11

Peptides

Bromodomain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bromodomain-containing protein 2

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