SMTL ID : 5dfc.1

Crystal structure of BRD2(BD2) W370F mutant with ligand I-BET 762 bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.61, D.66, E.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.61, A:D.66 Water bridges: A:K.61

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.2: 7 residues within 4Å: Chain A: S.6, L.9, K.10, N.13, M.62, E.63, R.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.10 Water bridges: A:N.13

1 x EAM: 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide(Non-covalent)

EAM.3: 9 residues within 4Å: Chain A: F.29, P.30, F.31, V.35, L.42, N.88, D.93, V.94, M.97 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.29, A:P.30, A:P.30, A:F.31, A:V.35, A:L.42, A:V.94, A:V.94 Hydrogen bonds: A:N.88 Water bridges: A:N.88

1 x NI: NICKEL (II) ION(Non-covalent)

NI.4: 1 residues within 4Å: Chain A: R.78 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baud, M.G. et al., New Synthetic Routes to Triazolo-benzodiazepine Analogues: Expanding the Scope of the Bump-and-Hole Approach for Selective Bromo and Extra-Terminal (BET) Bromodomain Inhibition. J.Med.Chem. (2016)

Release Date

2015-11-11

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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