SMTL ID : 5dfh.1 (1 other biounit)

Human APE1 mismatch product complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: L.2, Y.3, W.225, N.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.3, A:Y.3, A:R.232

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.54, H.267 Chain B: N.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.54, H2O.1, H2O.2, H2O.2, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freudenthal, B.D. et al., Capturing snapshots of APE1 processing DNA damage. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-10-14

Peptides

DNA-(apurinic or apyrimidinic site) lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) lyase

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