SMTL ID : 5dfj.1 (1 other biounit)

Human APE1 E96Q/D210N mismatch substrate complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: Q.54, K.56, Y.86, S.87, Y.129 Chain B: T.10 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: E.112, W.146 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: F.211, R.239, D.241, Y.242 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: H.173, D.209, R.239 Ligand excluded by PLIP CL.5: 7 residues within 4Å: Chain A: D.5, P.6, F.211, Y.215, D.255, S.256, K.257 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: M.228, M.229 Chain C: G.11, G.12 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 8 residues within 4Å: Chain A: R.143, W.146, D.147, F.150, L.169, G.197, F.198, L.201 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.143, A:D.147 EDO.7: 5 residues within 4Å: Chain A: L.2, Y.3, W.225, R.232, N.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.3, A:Y.3, A:R.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freudenthal, B.D. et al., Capturing snapshots of APE1 processing DNA damage. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-10-14

Peptides

DNA-(apurinic or apyrimidinic site) lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) lyase

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