SMTL ID : 5dfm.3 (2 other biounits)

Structure of Tetrahymena telomerase p19 fused to MBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 13 residues within 4Å: Chain A: K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340, R.344 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.62, A:R.66, A:R.66, A:E.153, A:Y.155, A:R.344 GLC-GLC.2: 14 residues within 4Å: Chain B: K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, M.330, W.340, R.344 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:W.62, B:R.66, B:R.66, B:Y.155, B:R.344 GLC-GLC.19: 13 residues within 4Å: Chain C: K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340, R.344 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:W.62, C:R.66, C:R.66, C:E.153, C:Y.155, C:R.344 GLC-GLC.20: 14 residues within 4Å: Chain D: K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, M.330, W.340, R.344 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:W.62, D:R.66, D:R.66, D:Y.155, D:R.344 GLC-GLC.37: 13 residues within 4Å: Chain E: K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340, R.344 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:W.62, E:R.66, E:R.66, E:Y.155, E:R.344 GLC-GLC.38: 14 residues within 4Å: Chain F: K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, M.330, W.340, R.344 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:W.62, F:R.66, F:R.66, F:E.153, F:Y.155, F:R.344

45 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: N.12, D.41, K.42 Ligands: SO4.4 Ligand excluded by PLIP SO4.4: 7 residues within 4Å: Chain A: K.42, N.150, Q.152, E.153, D.209, Y.210 Ligands: SO4.3 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: T.385, D.386, K.387, Q.470 Ligand excluded by PLIP SO4.6: 8 residues within 4Å: Chain A: K.382, R.408, M.517 Chain B: Y.99, N.100, I.333, P.334, Q.335 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: Y.17, N.18 Ligand excluded by PLIP SO4.9: 8 residues within 4Å: Chain A: Y.99, N.100, I.333, P.334, Q.335 Chain B: K.382, R.408, M.517 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: G.101 Chain B: N.496, H.513 Ligand excluded by PLIP SO4.11: 6 residues within 4Å: Chain A: D.379, N.496, H.512, H.513 Chain B: G.101, K.102 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain B: D.82, K.83 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: P.40, D.41, K.46 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: T.385, D.386, K.387 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain B: Y.17, N.18 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: T.356, D.358 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain B: K.414, S.447, Y.466, K.468, Q.473 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain B: G.13, E.214, N.234, K.297 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain C: N.12, D.41, K.42 Ligands: SO4.22 Ligand excluded by PLIP SO4.22: 7 residues within 4Å: Chain C: K.42, N.150, Q.152, E.153, D.209, Y.210 Ligands: SO4.21 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain C: T.385, D.386, K.387, Q.470 Ligand excluded by PLIP SO4.24: 8 residues within 4Å: Chain C: K.382, R.408, M.517 Chain D: Y.99, N.100, I.333, P.334, Q.335 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain C: Y.17, N.18 Ligand excluded by PLIP SO4.27: 8 residues within 4Å: Chain C: Y.99, N.100, I.333, P.334, Q.335 Chain D: K.382, R.408, M.517 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain C: G.101 Chain D: N.496, H.513 Ligand excluded by PLIP SO4.29: 6 residues within 4Å: Chain C: D.379, N.496, H.512, H.513 Chain D: G.101, K.102 Ligand excluded by PLIP SO4.30: 2 residues within 4Å: Chain D: D.82, K.83 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain D: P.40, D.41, K.46 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain D: T.385, D.386, K.387 Ligand excluded by PLIP SO4.33: 2 residues within 4Å: Chain D: Y.17, N.18 Ligand excluded by PLIP SO4.34: 2 residues within 4Å: Chain D: T.356, D.358 Ligand excluded by PLIP SO4.35: 5 residues within 4Å: Chain D: K.414, S.447, Y.466, K.468, Q.473 Ligand excluded by PLIP SO4.36: 4 residues within 4Å: Chain D: G.13, E.214, N.234, K.297 Ligand excluded by PLIP SO4.39: 4 residues within 4Å: Chain E: N.12, D.41, K.42 Ligands: SO4.40 Ligand excluded by PLIP SO4.40: 7 residues within 4Å: Chain E: K.42, N.150, Q.152, E.153, D.209, Y.210 Ligands: SO4.39 Ligand excluded by PLIP SO4.41: 4 residues within 4Å: Chain E: T.385, D.386, K.387, Q.470 Ligand excluded by PLIP SO4.42: 8 residues within 4Å: Chain E: K.382, R.408, M.517 Chain F: Y.99, N.100, I.333, P.334, Q.335 Ligand excluded by PLIP SO4.43: 2 residues within 4Å: Chain E: Y.17, N.18 Ligand excluded by PLIP SO4.45: 8 residues within 4Å: Chain E: Y.99, N.100, I.333, P.334, Q.335 Chain F: K.382, R.408, M.517 Ligand excluded by PLIP SO4.46: 3 residues within 4Å: Chain E: G.101 Chain F: N.496, H.513 Ligand excluded by PLIP SO4.47: 6 residues within 4Å: Chain E: D.379, N.496, H.512, H.513 Chain F: G.101, K.102 Ligand excluded by PLIP SO4.48: 2 residues within 4Å: Chain F: D.82, K.83 Ligand excluded by PLIP SO4.49: 3 residues within 4Å: Chain F: P.40, D.41, K.46 Ligand excluded by PLIP SO4.50: 3 residues within 4Å: Chain F: T.385, D.386, K.387 Ligand excluded by PLIP SO4.51: 2 residues within 4Å: Chain F: Y.17, N.18 Ligand excluded by PLIP SO4.52: 2 residues within 4Å: Chain F: T.356, D.358 Ligand excluded by PLIP SO4.53: 5 residues within 4Å: Chain F: K.414, S.447, Y.466, K.468, Q.473 Ligand excluded by PLIP SO4.54: 4 residues within 4Å: Chain F: G.13, E.214, N.234, K.297 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 6 residues within 4Å: Chain A: F.443, H.472, Q.473, D.505, I.506, L.507 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.471, A:Q.473, A:L.507 GOL.26: 6 residues within 4Å: Chain C: F.443, H.472, Q.473, D.505, I.506, L.507 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.471, C:Q.473, C:L.507 GOL.44: 6 residues within 4Å: Chain E: F.443, H.472, Q.473, D.505, I.506, L.507 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Q.471, E:Q.473, E:L.507

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, J. et al., Structure of Tetrahymena telomerase reveals previously unknown subunits, functions, and interactions. Science (2015)

Release Date

2015-10-28

Peptides

Maltose-binding periplasmic protein,Telomerase-associated protein 19: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Maltose-binding periplasmic protein,Telomerase-associated protein 19

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