SMTL ID : 5dfs.1 (1 other biounit)

Crystal structure of Spider Monkey Cytochrome C at 1.15 Angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 32 residues within 4Å: Chain A: F.11, K.14, C.15, Q.17, C.18, H.19, T.29, G.30, P.31, L.33, L.36, R.39, T.41, G.42, Q.43, A.44, F.47, Y.49, T.50, N.53, W.60, L.65, Y.68, L.69, T.79, K.80, M.81, I.82, F.83, I.86, L.95, L.99 29 PLIP interactions: 29 interactions with chain A, Hydrophobic interactions: A:L.36, A:F.47, A:Y.49, A:W.60, A:L.65, A:Y.68, A:L.69, A:M.81, A:F.83, A:F.83, A:F.83, A:I.86, A:L.95, A:L.99 Hydrogen bonds: A:G.42, A:Q.43, A:Y.49, A:T.50, A:T.50, A:N.53, A:W.60, A:T.79, A:T.79, A:K.80 Water bridges: A:R.39, A:R.39 Salt bridges: A:K.80 pi-Stacking: A:Y.68 Metal complexes: A:H.19

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: G.2, D.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.2 Water bridges: A:G.2, A:D.3 EDO.3: 2 residues within 4Å: Chain A: K.56, I.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.56, A:K.56

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: F.37, G.61, E.62, K.100 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: T.50, E.51 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goldes, M.E. et al., Disruption of a hydrogen bond network in human versus spider monkey cytochrome c affects heme crevice stability. J.Inorg.Biochem. (2016)

Release Date

2016-03-02

Peptides

Cytochrome c: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c

Related Entries With Identical Sequence