SMTL ID : 5dgo.1

Crystal structure of cell division cycle protein 45 (Cdc45)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 11 residues within 4Å: Chain A: W.207, W.208, I.352, F.354, V.365, S.392, L.393, S.394, R.395, L.398, L.401 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.207, A:L.393 Water bridges: A:W.208 EDO.2: 11 residues within 4Å: Chain A: W.217, V.218, L.265, R.266, L.267, V.268, V.347, T.349, L.361, S.363, F.367 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.267, A:S.363, A:S.363 EDO.3: 9 residues within 4Å: Chain A: V.268, N.281, T.282, S.283, F.367, L.412, T.415, Q.416, H.461 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.283, A:Q.416, A:Q.416 Water bridges: A:S.283 EDO.4: 9 residues within 4Å: Chain A: T.418, S.421, C.422, L.427, S.438, L.439, M.440, T.443, P.444 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.438, A:T.443 Water bridges: A:S.421 EDO.5: 9 residues within 4Å: Chain A: S.25, P.51, V.52, S.53, E.57, G.382, T.383, F.386, R.451 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.25, A:S.53, A:E.57, A:R.451 Water bridges: A:S.53, A:R.451 EDO.6: 8 residues within 4Å: Chain A: W.217, Q.224, Y.227, V.228, Y.263, R.266, V.347, Q.348 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.266, A:Q.348 Water bridges: A:W.217, A:Q.224, A:D.344

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 8 residues within 4Å: Chain A: F.175, Q.179, F.510, R.513, A.514, K.517, L.553, L.554 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.179 Water bridges: A:R.513, A:A.514, A:K.517, A:K.517 Salt bridges: A:K.517 SO4.8: 5 residues within 4Å: Chain A: W.273, D.277, K.317, K.409, R.413 6 PLIP interactions: 6 interactions with chain A Water bridges: A:S.274, A:K.409, A:K.409 Salt bridges: A:K.317, A:K.409, A:R.413 SO4.9: 7 residues within 4Å: Chain A: T.492, R.525, M.526, L.527, E.537, L.538, K.539 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.525 Water bridges: A:K.539

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simon, A.C. et al., Structure of human Cdc45 and implications for CMG helicase function. Nat Commun (2016)

Release Date

2016-05-25

Peptides

Cell division control protein 45 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division control protein 45 homolog