SMTL ID : 5dhf.1

Crystal Structure of hRio2 NES Peptide in complex with CRM1-Ran-RanBP1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 25 residues within 4Å: Chain A: D.39, G.40, G.41, T.42, G.43, K.44, T.45, T.46, F.56, E.57, K.58, K.59, Y.60, A.62, T.63, A.88, G.89, N.143, K.144, D.146, I.147, S.171, A.172, K.173 Ligands: MG.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:G.41, A:T.42, A:T.42, A:G.43, A:K.44, A:K.44, A:K.44, A:T.45, A:T.46, A:T.46, A:E.57, A:Y.60, A:T.63, A:T.63, A:G.89, A:N.143, A:K.144, A:K.144, A:A.172, A:K.173 Water bridges: A:T.45, A:Q.90, A:Q.90 Salt bridges: A:D.146 pi-Stacking: A:F.56, A:F.56

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.45, T.63, D.86 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.45, A:T.63, H2O.1, H2O.1

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: N.121, N.124, D.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.121, A:N.124, A:D.128 GOL.7: 4 residues within 4Å: Chain C: L.808, N.812, D.853, W.857 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.812 GOL.8: 7 residues within 4Å: Chain C: W.51, Q.52, A.54, D.55, G.92, I.93, F.96 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:W.51, C:A.54, C:D.55, C:D.55, C:D.55, C:G.92 GOL.9: 2 residues within 4Å: Chain C: I.428, Q.429 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:I.428, C:Q.429

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain C: E.358, R.359, F.362, N.400 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: K.162 Chain C: K.257, D.317 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain C: M.159, C.200, S.219, Y.223 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:S.219, C:Y.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fung, H.Y. et al., Structural determinants of nuclear export signal orientation in binding to exportin CRM1. Elife (2015)

Release Date

2015-09-16

Peptides

GTP-binding nuclear protein Ran: A
Ran-specific GTPase-activating protein 1: B
Exportin-1: C
Serine/threonine-protein kinase RIO2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GTP-binding nuclear protein Ran

Ran-specific GTPase-activating protein 1

Exportin-1

Serine/threonine-protein kinase RIO2

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