SMTL ID : 5diy.2 (1 other biounit)

Thermobaculum terrenum O-GlcNAc hydrolase mutant - D120N

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

1 x VAL- PRO- TYR- SER- SER: TGF-beta-activated kinase 1 and MAP3K7-binding protein 1(Non-covalent)

VAL-PRO-TYR-SER-SER.1: 9 residues within 4Å: Chain A: Y.14, N.120, Y.168, V.197, D.228, G.229, G.230, M.231 Ligands: NAG.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.14, A:Y.14, A:V.197 Hydrogen bonds: A:N.120, A:Y.168, A:D.228, A:G.230 pi-Stacking: A:Y.14

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 18 residues within 4Å: Chain A: G.12, F.13, Y.14, K.43, D.119, N.120, C.164, Y.168, T.193, V.197, W.221, N.223, V.226, D.228, N.257 Ligands: VAL-PRO-TYR-SER-SER.1, VAL-PRO-TYR-SER-SER.1, VAL-PRO-TYR-SER-SER.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:D.119, A:Y.168, A:T.193, A:W.221 Hydrogen bonds: A:G.12, A:K.43, A:K.43, A:D.119, A:D.119, A:N.223, A:D.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ostrowski, A. et al., Evidence for a Functional O-Linked N-Acetylglucosamine (O-GlcNAc) System in the Thermophilic Bacterium Thermobaculum terrenum. J.Biol.Chem. (2015)

Release Date

2015-10-28

Peptides

Hyaluronidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hyaluronidase

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