SMTL ID : 5dka.2 (1 other biounit)

A C2HC zinc finger is essential for the activity of the RING ubiquitin ligase RNF125

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.37, C.40, C.57, C.60 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.37, A:C.40, A:C.57, A:C.60 ZN.2: 4 residues within 4Å: Chain A: C.100, C.103, H.115, C.119 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.100, A:C.103, A:H.115, A:C.119 ZN.3: 4 residues within 4Å: Chain A: C.52, H.54, C.72, C.75 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.52, A:H.54, A:C.72, A:C.75

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain A: D.36, V.43, K.98 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.36

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: K.69, W.70 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: A.77, Y.78 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: T.105, L.106 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bijlmakers, M.J. et al., A C2HC zinc finger is essential for the RING-E2 interaction of the ubiquitin ligase RNF125. Sci Rep (2016)

Release Date

2016-07-27

Peptides

E3 ubiquitin-protein ligase RNF125: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase RNF125

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