SMTL ID : 5dkt.1 (1 other biounit)

N-terminal His tagged apPOL exonuclease mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.539, A.541, L.542, Q.543 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.542, A:Q.543, A:Q.543 Salt bridges: A:K.539 SO4.2: 5 residues within 4Å: Chain A: Q.104, Q.214, S.217, W.219 Ligands: NA.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.214, A:W.219 Water bridges: A:N.102 SO4.3: 4 residues within 4Å: Chain A: Q.158, N.159, K.197, L.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.159, A:L.198 SO4.4: 3 residues within 4Å: Chain A: N.404, Q.406, Q.407 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.404, A:Q.407 SO4.5: 3 residues within 4Å: Chain A: T.393, F.394, S.395 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.394, A:S.395, A:S.395 SO4.6: 5 residues within 4Å: Chain A: K.372, E.401, K.402, P.403, N.404 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.402, A:N.404 Water bridges: A:K.372, A:K.372 Salt bridges: A:K.372 SO4.7: 2 residues within 4Å: Chain A: N.444, K.531 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.444 Salt bridges: A:K.531 SO4.8: 4 residues within 4Å: Chain A: N.254, L.255, H.256, I.257 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.254, A:H.256, A:I.257 SO4.9: 3 residues within 4Å: Chain A: K.189, K.191, I.553 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.189, A:K.191

1 x NA: SODIUM ION(Non-functional Binders)

NA.10: 3 residues within 4Å: Chain A: N.102, Q.104 Ligands: SO4.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.102, A:I.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Milton, M.E. et al., Crystal Structure of the Apicoplast DNA Polymerase from Plasmodium falciparum: The First Look at a Plastidic A-Family DNA Polymerase. J.Mol.Biol. (2016)

Release Date

2016-08-10

Peptides

Prex DNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prex DNA polymerase

Related Entries With Identical Sequence