SMTL ID : 5dly.1

Crystal structure of the plantazolicin methyltransferase BamL in complex with monoazolic desmethylPZN analog and SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x 5D7: prop-2-en-1-yl 2-[(1S)-1-amino-4-carbamimidamidobutyl]-1,3-thiazole-4-carboxylate(Non-covalent)

5D7.1: 18 residues within 4Å: Chain A: F.20, Y.32, D.33, T.37, L.131, C.132, G.134, L.135, D.160, L.161, Y.181, L.182, Q.185, Y.186, S.189, M.254, P.255 Ligands: SAH.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.20, A:M.254 Hydrogen bonds: A:D.33, A:G.134, A:Q.185, A:Q.185, A:S.189 Water bridges: A:L.190 Salt bridges: A:D.160

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 15 residues within 4Å: Chain A: Q.17, F.20, G.67, G.69, D.90, S.91, S.92, S.111, N.112, A.113, H.130, C.132, L.135, F.136 Ligands: 5D7.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.69, A:S.91, A:S.91, A:S.92, A:N.112, A:A.113, A:H.130 Water bridges: A:Q.17, A:R.41, A:R.41, A:H.130 Salt bridges: A:H.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, Y. et al., Insights into methyltransferase specificity and bioactivity of derivatives of the antibiotic plantazolicin. ACS Chem. Biol. (2015)

Release Date

2015-09-30

Peptides

plantazolicin methyltransferase BamL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

plantazolicin methyltransferase BamL