SMTL ID : 5dnw.1

Crystal structure of KAI2-like protein from Striga (apo state 1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 6 residues within 4Å: Chain A: D.134, Y.135, R.204, Y.232, R.236 Ligands: FMT.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.134, A:R.204, A:Y.232 FMT.2: 2 residues within 4Å: Chain A: R.113, D.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.112 Water bridges: A:R.113 FMT.3: 4 residues within 4Å: Chain A: Y.135, L.136, S.228, V.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.136 Water bridges: A:S.228, A:S.228 FMT.4: 3 residues within 4Å: Chain A: P.263, V.264, R.267 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.267 FMT.5: 4 residues within 4Å: Chain A: T.132, A.133, E.140, P.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.132 FMT.6: 3 residues within 4Å: Chain A: F.67, H.68, R.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.68, A:R.187, A:R.187 FMT.7: 4 residues within 4Å: Chain A: R.204, D.205, R.236 Ligands: FMT.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.236 Water bridges: A:D.205

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 3 residues within 4Å: Chain A: Y.232, N.235, R.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.235, A:R.236 EDO.9: 3 residues within 4Å: Chain A: T.211, V.212, P.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.211, A:T.211

3 x NA: SODIUM ION(Non-functional Binders)

NA.10: 3 residues within 4Å: Chain A: P.114, F.117, V.212 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.114 NA.11: 1 residues within 4Å: Ligands: NA.12 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.234, A:G.239, A:S.241 NA.12: 3 residues within 4Å: Chain A: V.237, G.239 Ligands: NA.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y. et al., Structural basis of unique ligand specificity of KAI2-like protein from parasitic weed Striga hermonthica. Sci Rep (2016)

Release Date

2016-08-17

Peptides

ShKAI2iB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ShKAI2iB

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