SMTL ID : 5do8.1

1.8 Angstrom crystal structure of Listeria monocytogenes Lmo0184 alpha-1,6-glucosidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 13 residues within 4Å: Chain A: D.61, Y.64, H.104, F.142, F.161, Q.165, R.195, D.197, E.254, H.327, D.328, R.413 Ligands: BTB.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.61, A:H.104, A:Q.165, A:R.195, A:E.254, A:H.327, A:H.327, A:R.413, A:R.413, A:R.417 Water bridges: A:D.328 Salt bridges: A:R.195 BGC.4: 13 residues within 4Å: Chain B: D.61, Y.64, H.104, F.142, F.161, Q.165, R.195, D.197, E.254, H.327, D.328, R.413 Ligands: BTB.6 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:D.61, B:D.61, B:H.104, B:Q.165, B:R.195, B:E.254, B:H.327, B:H.327, B:R.413, B:R.413 Water bridges: B:R.195, B:D.197, B:D.197, B:R.417 Salt bridges: B:R.195 BGC.7: 13 residues within 4Å: Chain C: D.61, Y.64, H.104, F.142, F.161, Q.165, R.195, D.197, E.254, H.327, D.328, R.413 Ligands: BTB.10 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:D.61, C:D.61, C:H.104, C:Q.165, C:R.195, C:V.198, C:E.254, C:H.327, C:H.327, C:R.413, C:R.413, C:R.417 Water bridges: C:D.328 Salt bridges: C:R.195

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: S.162, K.163, N.389 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: S.162, K.163, I.385, N.389 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain C: N.121 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: S.162, K.163, N.389 Ligand excluded by PLIP

3 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.3: 12 residues within 4Å: Chain A: I.141, F.161, V.198, F.201, E.254, P.256, F.280, K.292, D.328, E.386, R.413 Ligands: BGC.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.292, A:K.292, A:D.328, A:R.413, A:R.413 Water bridges: A:N.284, A:D.328 BTB.6: 12 residues within 4Å: Chain B: I.141, F.161, V.198, F.201, E.254, P.256, F.280, K.292, D.328, E.386, R.413 Ligands: BGC.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.292, B:K.292, B:D.328, B:E.386, B:R.413 Water bridges: B:Q.329, B:Q.329 Salt bridges: B:E.386 BTB.10: 12 residues within 4Å: Chain C: I.141, F.161, V.198, F.201, E.254, P.256, F.280, K.292, D.328, E.386, R.413 Ligands: BGC.7 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:K.292, C:K.292, C:D.328, C:R.413, C:R.413 Water bridges: C:D.328, C:Q.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Light, S.H. et al., Structure to function of an alpha-glucan metabolic pathway that promotes Listeria monocytogenes pathogenesis. Nat Microbiol (2016)

Release Date

2015-09-30

Peptides

Lmo0184 protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

Lmo0184 protein