SMTL ID : 5dpg.1

sfGFP mutant - 133 p-cyano-L-phenylalanine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: E.141, N.169, V.170, E.171, G.173 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.170, A:G.173 Water bridges: A:N.143, A:N.169, A:V.170 EDO.2: 3 residues within 4Å: Chain A: E.18, D.20 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.20 EDO.3: 7 residues within 4Å: Chain A: D.20, G.21, D.22, E.123, L.124, K.125 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.123, A:L.124 EDO.4: 7 residues within 4Å: Chain A: R.108, A.109, E.110, R.121, I.122, E.123 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.108 EDO.5: 3 residues within 4Å: Chain A: R.121 Ligands: EDO.2, EDO.6 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: E.110, R.121, E.123 Ligands: EDO.4, EDO.5 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: G.137, H.138, K.139, L.140, E.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.137, A:H.138 Water bridges: A:L.140 EDO.8: 4 residues within 4Å: Chain A: K.100, K.165, L.177, D.179 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.165 Water bridges: A:D.179 EDO.9: 7 residues within 4Å: Chain A: K.106, T.107, R.108, E.123, L.124, K.125 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.123, A:E.123 EDO.10: 7 residues within 4Å: Chain A: E.94, R.95, T.96, K.106, Y.181, Q.182, Q.183 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.94, A:T.96, A:Q.183 Water bridges: A:R.95, A:T.107

2 x NA: SODIUM ION(Non-functional Binders)

NA.11: 3 residues within 4Å: Chain A: H.147, N.148, R.167 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.148, A:R.167 Water bridges: A:N.148, A:N.148, A:Y.150, A:R.167 NA.12: 5 residues within 4Å: Chain A: N.40, G.41, R.72, F.222, T.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dippel, A.B. et al., Probing the effectiveness of spectroscopic reporter unnatural amino acids: a structural study. Acta Crystallogr D Struct Biol (2016)

Release Date

2016-01-13

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein

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