SMTL ID : 5dpl.1

The structure of PKMT2 from Rickettsia typhi in complex with AdoHcy

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 13 residues within 4Å: Chain A: F.19, F.21, G.52, C.53, D.75, L.76, Q.80, L.101, S.102, I.103, H.119, G.120, V.121 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.52, A:L.76, A:Q.80, A:Q.80, A:S.102, A:I.103 Salt bridges: A:H.119 SAH.2: 12 residues within 4Å: Chain B: F.19, F.21, G.52, D.75, L.76, Q.80, L.101, S.102, I.103, H.119, G.120, V.121 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.52, B:D.75, B:L.76, B:Q.80, B:S.102, B:I.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abeykoon, A.H. et al., Structural Insights into Substrate Recognition and Catalysis in Outer Membrane Protein B (OmpB) by Protein-lysine Methyltransferases from Rickettsia. J.Biol.Chem. (2016)

Release Date

2016-08-10

Peptides

protein lysine methyltransferase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

protein lysine methyltransferase 2

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