SMTL ID : 5dpn.1

Engineered CBM X-2 L110F in complex with branched carbohydrate XXXG.

Coordinates

PDB Format Compare

Method

NEUTRON DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- XYS- XYS- XYS: alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-XYS-XYS-XYS.1: 17 residues within 4Å: Chain A: D.29, N.67, P.68, F.69, Q.72, T.74, S.102, T.104, F.110, D.111, E.112, R.115, H.117, R.142, P.144, H.146, Y.149 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.115, A:R.115, A:R.115, A:H.146, A:Y.149

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain A: G.9, E.11, A.50, E.52, G.53, K.55, D.160 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.9, A:E.11, A:E.52, A:E.52, A:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fisher, S.Z. et al., Neutron Crystallographic Studies Reveal Hydrogen Bond and Water-Mediated Interactions between a Carbohydrate-Binding Module and Its Bound Carbohydrate Ligand. Biochemistry (2015)

Release Date

2015-10-28

Peptides

Xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Xylanase

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