SMTL ID : 5dqy.2 (1 other biounit)

A fully oxidized human thioredoxin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.1: 12 residues within 4Å: Chain A: I.5, E.6, S.7, K.8, F.11, V.57, D.61, C.62, Q.63, S.67, E.68, C.69 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.5, A:K.8, A:F.11, A:V.57 Hydrogen bonds: A:Q.63, A:E.68, A:C.69 BEZ.4: 12 residues within 4Å: Chain B: I.5, E.6, S.7, K.8, F.11, V.57, D.61, C.62, Q.63, S.67, E.68, C.69 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.5, B:K.8, B:F.11, B:V.57 Hydrogen bonds: B:Q.63, B:E.68, B:C.69

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.49, S.50, N.51, V.52 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: Y.49, S.50, N.51, V.52 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: K.48, Y.49, N.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.48 Water bridges: A:N.102 GOL.6: 3 residues within 4Å: Chain B: K.48, Y.49, N.102 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.48, B:Y.49 Water bridges: B:N.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hwang, J. et al., Crystal structure of fully oxidized human thioredoxin. Biochem.Biophys.Res.Commun. (2015)

Release Date

2015-12-23

Peptides

Thioredoxin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Thioredoxin

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