SMTL ID : 5dro.1 (1 other biounit)

Structure of the Aquifex aeolicus LpxC/LPC-011 Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.74, H.226, D.230 Ligands: ZH2.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.74, A:H.226, A:D.230, A:D.230

1 x ZH2: 4-[4-(4-aminophenyl)buta-1,3-diyn-1-yl]-N-[(2S,3R)-3-hydroxy-1-(hydroxyamino)-1-oxobutan-2-yl]benzamide(Non-covalent)

ZH2.2: 17 residues within 4Å: Chain A: I.18, H.19, H.58, E.73, H.74, T.179, F.180, A.181, I.186, G.198, S.199, T.203, H.226, K.227, D.230, H.253 Ligands: ZN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.18, A:F.180, A:A.181, A:I.186 Hydrogen bonds: A:H.58, A:T.179, A:T.179, A:K.227, A:K.227 Water bridges: A:H.58

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 1 residues within 4Å: Chain A: K.112 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, C.J. et al., Drug design from the cryptic inhibitor envelope. Nat Commun (2016)

Release Date

2016-03-09

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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