SMTL ID : 5dsd.2 (2 other biounits)

The crystal structure of the C-terminal domain of Ebola (Bundibugyo) nucleoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: K.67, E.68, N.71, N.74 No protein-ligand interaction detected (PLIP) GOL.2: 2 residues within 4Å: Chain A: N.90, R.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.92 Water bridges: A:N.90, A:R.92 GOL.4: 4 residues within 4Å: Chain B: K.67, E.68, N.71, N.74 No protein-ligand interaction detected (PLIP) GOL.5: 2 residues within 4Å: Chain B: N.90, R.92 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.90, B:R.92 Water bridges: B:R.92

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain B: S.43 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: S.43 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baker, L.E. et al., Molecular architecture of the nucleoprotein C-terminal domain from the Ebola and Marburg viruses. Acta Crystallogr D Struct Biol (2016)

Release Date

2015-09-30

Peptides

Nucleoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nucleoprotein

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