SMTL ID : 5dtu.1

Crystal structure of the RNA-helicase Prp28 from Chaetomium thermophilum bound to ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: W.44, Y.62, E.64, Q.69, T.88, G.89, S.90, G.91, K.92, T.93, E.137, E.200 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:E.64, A:Q.69, A:G.89, A:S.90, A:G.91, A:K.92, A:T.93, A:E.137, A:E.200 Salt bridges: A:K.92 pi-Stacking: A:Y.62, A:Y.62

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: S.90, G.91, K.92, T.93 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tauchert, M.J. et al., Structural analysis of the spliceosomal RNA helicase Prp28 from the thermophilic eukaryote Chaetomium thermophilum. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-05-04

Peptides

Prp28: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prp28