SMTL ID : 5du9.1 (1 other biounit)

First condensation domain of the calcium-dependent antibiotic synthetase in complex with substrate analogue 2a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.196, G.299, A.300, N.301 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.300, A:N.301 Water bridges: A:N.301, A:A.302

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: H.158, D.162, G.163, S.310 Ligands: UM2.3 Ligand excluded by PLIP

1 x UM2: (2S)-2-amino-N-butyl-propanamide(Covalent)

UM2.3: 14 residues within 4Å: Chain A: A.15, C.18, V.19, Y.32, H.158, M.308, S.310, R.312, R.346, E.348, S.387, G.388, P.389 Ligands: CL.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.19 Hydrogen bonds: A:H.158 Water bridges: A:G.163, A:S.310, A:S.310, A:R.312, A:R.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bloudoff, K. et al., Chemical Probes Allow Structural Insight into the Condensation Reaction of Nonribosomal Peptide Synthetases. Cell Chem Biol (2016)

Release Date

2016-03-30

Peptides

CDA peptide synthetase I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CDA peptide synthetase I

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