SMTL ID : 5duo.2 (1 other biounit)

Crystal structure of native translocator protein 18kDa (TSPO) from Rhodobacter sphaeroides (A139T Mutant) in C2 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

8 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 8 residues within 4Å: Chain A: Q.72, F.76, W.116 Chain B: L.9, T.10, L.12, A.13 Ligands: OLC.4 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.12, B:A.13, A:F.76 OLC.2: 6 residues within 4Å: Chain A: M.105, W.108, L.109, A.112, W.116, T.140 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.108, A:W.108, A:L.109, A:A.112 OLC.3: 5 residues within 4Å: Chain A: P.42, W.44, V.45, L.48, S.52 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.45, A:L.48, A:L.48 OLC.4: 9 residues within 4Å: Chain A: F.76, F.83, A.102, F.110, A.113, W.116 Chain B: A.13, T.20 Ligands: OLC.1 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:A.13, A:F.83, A:A.102, A:F.110, A:A.113 OLC.5: 8 residues within 4Å: Chain A: L.9, T.10, L.12, A.13 Chain B: Q.72, F.76, W.116 Ligands: OLC.8 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.76, A:L.12, A:A.13 OLC.6: 6 residues within 4Å: Chain B: M.105, W.108, L.109, A.112, W.116, T.140 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.108, B:W.108, B:L.109, B:A.112 OLC.7: 5 residues within 4Å: Chain B: P.42, W.44, V.45, L.48, S.52 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.45, B:L.48, B:L.48 OLC.8: 9 residues within 4Å: Chain A: A.13, T.20 Chain B: F.76, F.83, A.102, F.110, A.113, W.116 Ligands: OLC.5 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.83, B:A.102, B:F.110, B:A.113, A:A.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, F. et al., Response to Comment on "Crystal structures of translocator protein (TSPO) and mutant mimic of a human polymorphism". Science (2015)

Release Date

2015-11-11

Peptides

Tryptophan-rich sensory protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Membrane

We predict this structure to be a membrane protein.
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Tryptophan-rich sensory protein

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