SMTL ID : 5dus.1

Crystal structure of MERS-CoV macro domain in complex with ADP-ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.1: 22 residues within 4Å: Chain A: G.23, D.24, A.25, A.40, A.41, N.42, K.46, H.47, G.48, G.49, G.50, I.51, A.52, P.127, L.128, S.130, A.131, G.132, I.133, F.134, V.156, N.158 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:D.24, A:A.25, A:N.42, A:G.48, A:G.50, A:I.51, A:S.130, A:S.130, A:G.132, A:I.133, A:F.134, A:N.158, A:N.158 Water bridges: A:N.42, A:A.52, A:A.52, A:L.128, A:A.131, A:N.158, A:N.158

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.147 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.147 Salt bridges: A:R.147 SO4.3: 2 residues within 4Å: Chain A: T.43, H.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.43 Salt bridges: A:H.44 SO4.4: 3 residues within 4Å: Chain A: Q.86, G.87, H.88 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.86, A:G.87, A:H.88, A:S.89 Water bridges: A:Q.86, A:K.92, A:K.92

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: D.101, R.103, A.104, I.133 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.103 GOL.6: 3 residues within 4Å: Chain A: D.143, Y.144, R.147 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, C.-C. et al., Macro Domain from Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Is an Efficient ADP-ribose Binding Module: CRYSTAL STRUCTURE AND BIOCHEMICAL STUDIES. J.Biol.Chem. (2016)

Release Date

2016-01-13

Peptides

ORF1a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ORF1a

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