SMTL ID : 5dv4.1

Crystal structure of human CNOT6L in complex with neomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NMY: NEOMYCIN(Non-covalent)

NMY.1: 17 residues within 4Å: Chain A: L.49, Y.50, E.83, N.168, H.203, M.204, W.206, P.208, K.214, D.253, N.255, L.257, N.322, F.327, I.331, H.372 Ligands: SO4.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.49 Hydrogen bonds: A:N.38, A:E.83, A:N.168, A:M.204, A:K.214, A:N.255, A:N.255, A:N.255, A:N.255, A:H.372 Water bridges: A:Y.44, A:Y.50, A:Y.50, A:W.206, A:L.257, A:N.322, A:D.371 Salt bridges: A:K.214

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Y.44, W.206 Ligands: NMY.1 No protein-ligand interaction detected (PLIP) SO4.3: 4 residues within 4Å: Chain A: T.86, E.87, F.90, K.121 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Q. et al., Structural basis for inhibition of the deadenylase activity of human CNOT6L. Febs Lett. (2016)

Release Date

2016-10-26

Peptides

CCR4-NOT transcription complex subunit 6-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CCR4-NOT transcription complex subunit 6-like

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