- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x PKZ: Palmitoyl-CoA(Non-covalent)
PKZ.1: 27 residues within 4Å:- Chain A: L.122, L.123, A.124, A.125, R.126, T.127, I.129, N.203, D.206, I.225, L.229, Y.233, V.236, G.237, Y.240, F.241, R.274, G.277, M.278, S.280, A.281, W.284
- Chain B: R.135, Y.136, K.139, S.217, R.266
26 PLIP interactions:22 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:L.122, A:L.123, A:A.125, A:R.126, A:I.129, A:I.225, A:Y.233, A:Y.233, A:V.236, A:Y.240, A:F.241
- Hydrogen bonds: A:R.126, A:R.126, A:S.280, B:Y.136, B:S.217
- Water bridges: A:A.124, A:A.124, A:R.274, A:Y.276, A:S.280
- Salt bridges: A:R.274, A:R.274, A:R.274, B:R.135, B:R.266
PKZ.2: 37 residues within 4Å:- Chain A: I.103, L.104, L.107, R.147, N.151, S.155, Y.174, K.177, V.178, F.204, Y.205, M.208, Q.211, R.212, F.215, H.216, Q.220, I.221, L.224, I.225, N.227, G.228, L.229
- Chain B: I.41, W.42, G.44, P.48, W.81, F.95, M.96, I.103, T.106, L.107, L.110, I.118, L.229
- Ligands: PKZ.4
18 PLIP interactions:16 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:I.103, A:L.224, A:L.229, B:F.95, B:I.103
- Hydrogen bonds: A:R.147, A:N.151, A:S.155, A:S.155, A:Y.205, A:R.212, A:N.227
- Water bridges: A:Q.211
- Salt bridges: A:K.177, A:R.212, A:H.216
- pi-Stacking: A:Y.174, A:Y.174
PKZ.3: 27 residues within 4Å:- Chain A: R.135, Y.136, K.139, R.266
- Chain B: L.122, L.123, A.124, A.125, R.126, T.127, I.129, N.203, D.206, I.225, F.226, L.229, Y.233, V.236, G.237, Y.240, F.241, R.274, G.277, M.278, S.280, A.281, W.284
29 PLIP interactions:23 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:L.123, B:R.126, B:I.129, B:I.225, B:F.226, B:F.226, B:L.229, B:Y.233, B:Y.233, B:V.236, B:V.236, B:Y.240, B:F.241
- Hydrogen bonds: B:R.126, B:R.126, B:T.127, B:S.280, A:R.135, A:R.135, A:Y.136, A:A.140, A:R.266
- Water bridges: B:A.124, B:A.124, B:S.280
- Salt bridges: B:R.274, B:R.274, B:R.274
- pi-Cation interactions: A:R.266
PKZ.4: 35 residues within 4Å:- Chain A: I.41, W.42, P.48, W.81, F.95, M.96, I.103, T.106, L.107, L.110, I.118, L.229
- Chain B: L.104, L.107, R.147, N.151, S.155, Y.174, K.177, V.178, F.204, Y.205, M.208, Q.211, R.212, F.215, H.216, Q.220, I.221, L.224, I.225, N.227, G.228, L.229
- Ligands: PKZ.2
23 PLIP interactions:18 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:L.104, B:L.107, B:F.215, B:F.215, B:F.215, B:I.221, A:W.42, A:W.42, A:W.81, A:I.103, A:L.107
- Hydrogen bonds: B:N.151, B:N.151, B:S.155, B:R.212, B:N.227
- Salt bridges: B:R.147, B:R.147, B:K.177, B:R.212, B:H.216
- pi-Stacking: B:Y.174, B:Y.174
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feng, Y.J. et al., Snapshort of Vibrio FadR-ligand complex structure reveals a new mechanism for bacterial fatty acid sensing. To Be Published
- Release Date
- 2016-10-05
- Peptides
- GntR family transcriptional regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x PKZ: Palmitoyl-CoA(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feng, Y.J. et al., Snapshort of Vibrio FadR-ligand complex structure reveals a new mechanism for bacterial fatty acid sensing. To Be Published
- Release Date
- 2016-10-05
- Peptides
- GntR family transcriptional regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B