SMTL ID : 5dvy.1

2.95 Angstrom Crystal Structure of the Dimeric Form of Penicillin Binding Protein 2 Prime from Enterococcus faecium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 4 residues within 4Å: Chain A: A.275, L.481, P.482, S.484 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.275, A:L.481 TRS.16: 4 residues within 4Å: Chain B: A.275, L.481, P.482, S.484 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.275, B:L.481

28 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.39, K.40, L.47, S.48, E.49 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: S.71, N.72, L.73 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: R.148, N.149 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: N.258, K.278, R.281 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: W.420, Q.456 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: V.437, S.438, Q.439 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: G.462, E.463, K.464 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain A: K.541, E.542 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: G.551, E.552, T.553 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain A: V.559, P.560, R.563, P.611 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: S.270, G.271, M.274 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain A: N.416, G.417, L.418, K.419 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain A: S.425, S.498, D.499, I.500 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain A: Y.246, S.270, Y.368, F.379 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain B: K.39, K.40, L.47, S.48, E.49 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: S.71, N.72, L.73 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain B: R.148, N.149 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain B: N.258, K.278, R.281 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain B: W.420, Q.456 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain B: V.437, S.438, Q.439 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain B: G.462, E.463, K.464 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain B: K.541, E.542 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain B: G.551, E.552, T.553 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain B: V.559, P.560, R.563, P.611 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain B: S.270, G.271, M.274 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain B: N.416, G.417, L.418, K.419 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain B: S.425, S.498, D.499, I.500 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain B: Y.246, S.270, Y.368, F.379 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 2.95 Angstrom Crystal Structure of the Dimeric Form of Penicillin Binding Protein 2 Prime from Enterococcus faecium. To Be Published

Release Date

2015-10-07

Peptides

Penicillin binding protein 2 prime: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Penicillin binding protein 2 prime