SMTL ID : 5dw4.1

Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to acetate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-dimer

Ligands

5 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 6 residues within 4Å: Chain A: T.487, L.490, S.491, Q.494 Chain B: L.486, T.487 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.487 Water bridges: A:L.490, A:L.490 IMD.2: 6 residues within 4Å: Chain A: V.273, A.274, M.360, N.361, G.362, L.402 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.360 Water bridges: A:V.273, A:A.274, A:A.274 IMD.3: 7 residues within 4Å: Chain A: M.418, A.419, A.420, V.422 Chain B: M.418, A.419, V.422 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.420 Water bridges: A:V.422, B:A.419 IMD.4: 4 residues within 4Å: Chain A: I.364, V.377, A.407, I.412 No protein-ligand interaction detected (PLIP) IMD.9: 6 residues within 4Å: Chain A: L.486, T.487 Chain B: T.487, L.490, S.491, Q.494 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:L.490 Hydrogen bonds: A:L.486

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 7 residues within 4Å: Chain A: R.442, G.443 Chain B: F.110, N.112, R.120, N.125, Y.126 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.110, B:Y.126 Hydrogen bonds: B:N.112, B:N.112, B:N.125, A:G.443 Water bridges: B:R.120, B:R.120 Salt bridges: B:R.120 ACT.6: 6 residues within 4Å: Chain A: T.36, S.71, F.92, T.94, R.228, V.270 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.270 Hydrogen bonds: A:S.71 Water bridges: A:S.71 Salt bridges: A:R.228 ACT.7: 7 residues within 4Å: Chain A: R.354 Chain B: D.194, I.195, V.196, S.348, G.350, R.354 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.196 Hydrogen bonds: B:V.196, B:V.196 Salt bridges: B:R.354, A:R.354 ACT.8: 6 residues within 4Å: Chain A: I.195, V.196, S.348, G.350, R.354 Chain B: R.354 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.196 Hydrogen bonds: A:V.196, A:V.196 Salt bridges: A:R.354, B:R.354 ACT.10: 6 residues within 4Å: Chain B: T.36, S.71, F.92, T.94, R.228, V.270 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.270 Hydrogen bonds: B:S.71 Water bridges: B:R.228, B:R.228 Salt bridges: B:R.228 ACT.11: 7 residues within 4Å: Chain A: F.110, N.112, R.120, N.125, Y.126 Chain B: R.442, G.443 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.110, A:Y.126 Hydrogen bonds: A:N.112, A:N.112, A:N.125, B:G.443 Water bridges: A:R.120, A:R.120 Salt bridges: A:R.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murphy, J.R. et al., Functional Dissection of the Bipartite Active Site of the Class I Coenzyme A (CoA)-Transferase Succinyl-CoA:Acetate CoA-Transferase. Front Chem (2016)

Release Date

2016-05-04

Peptides

Succinyl-CoA:acetate CoA-transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Succinyl-CoA:acetate CoA-transferase

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