SMTL ID : 5dx6.1

Acetolactate Synthase from Klebsiella pneumoniae soaked with beta-fluoropyruvate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: F.276, G.278, R.279, Q.286, R.372, A.422, R.423, L.425, Y.426 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.279, A:Q.286, A:R.423, A:R.423, A:L.425, A:Y.426 Salt bridges: A:R.279, A:R.372 PO4.9: 9 residues within 4Å: Chain C: F.276, G.278, R.279, Q.286, R.372, A.422, R.423, L.425, Y.426 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:R.279, C:Q.286, C:R.423, C:R.423, C:L.425, C:Y.426 Salt bridges: C:R.279, C:R.372

8 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.467, D.494, G.496 Ligands: 5GY.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.467, A:D.494, A:G.496, H2O.1 MG.3: 2 residues within 4Å: Chain A: S.149, T.152 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.149, A:T.152, H2O.9, H2O.9 MG.5: 4 residues within 4Å: Chain B: D.467, D.494, G.496 Ligands: TPP.7 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.467, B:D.494, B:G.496, H2O.16 MG.6: 2 residues within 4Å: Chain B: S.149, T.152 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:S.149, B:T.152, H2O.23, H2O.23, H2O.27, H2O.27 MG.10: 4 residues within 4Å: Chain C: D.467, D.494, G.496 Ligands: 5GY.12 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.467, C:D.494, C:G.496, H2O.31 MG.11: 2 residues within 4Å: Chain C: S.149, T.152 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.149, C:T.152, H2O.39, H2O.39 MG.13: 4 residues within 4Å: Chain D: D.467, D.494, G.496 Ligands: TPP.15 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.467, D:D.494, D:G.496, H2O.46 MG.14: 2 residues within 4Å: Chain D: S.149, T.152 6 PLIP interactions: 2 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:S.149, D:T.152, H2O.53, H2O.53, H2O.57, H2O.57

2 x 5GY: 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1R)-2-fluoro-1-hydroxyethyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium(Non-covalent)

5GY.4: 27 residues within 4Å: Chain A: M.414, G.415, S.416, F.417, Q.440, M.442, G.466, D.467, G.468, G.469, Q.472, D.494, G.496, Y.497, N.498, M.499, V.500, Y.563 Chain C: I.52, P.53, G.54, A.55, E.77, T.100, P.103, N.107 Ligands: MG.2 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:S.416, A:Q.440, A:Q.440, A:M.442, A:G.466, A:D.467, A:G.468, A:G.469, A:G.496, A:N.498, A:M.499 Hydrophobic interactions: C:I.52, C:P.103 5GY.12: 27 residues within 4Å: Chain A: I.52, P.53, G.54, A.55, E.77, T.100, P.103, N.107 Chain C: M.414, G.415, S.416, F.417, Q.440, M.442, G.466, D.467, G.468, G.469, Q.472, D.494, G.496, Y.497, N.498, M.499, V.500, Y.563 Ligands: MG.10 15 PLIP interactions: 3 interactions with chain A, 12 interactions with chain C Hydrophobic interactions: A:I.52, A:P.103 Water bridges: A:E.77 Hydrogen bonds: C:S.416, C:Q.440, C:Q.440, C:M.442, C:G.466, C:D.467, C:G.468, C:G.469, C:G.496, C:N.498, C:M.499, C:Y.563

2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)

TPP.7: 25 residues within 4Å: Chain B: M.414, G.415, S.416, F.417, Q.440, M.442, G.466, D.467, G.468, G.469, Q.472, D.494, G.496, Y.497, N.498, M.499, V.500, Y.563 Chain D: I.52, P.53, E.77, T.100, P.103, N.107 Ligands: MG.5 18 PLIP interactions: 15 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:Y.497, B:Y.497, B:V.500, D:I.52, D:T.100, D:P.103 Hydrogen bonds: B:S.416, B:F.417, B:Q.440, B:M.442, B:G.466, B:D.467, B:D.467, B:G.468, B:G.469, B:N.498, B:M.499, B:Y.563 TPP.15: 25 residues within 4Å: Chain B: I.52, P.53, E.77, T.100, P.103, N.107 Chain D: M.414, G.415, S.416, F.417, Q.440, M.442, G.466, D.467, G.468, G.469, Q.472, D.494, G.496, Y.497, N.498, M.499, V.500, Y.563 Ligands: MG.13 17 PLIP interactions: 4 interactions with chain B, 13 interactions with chain D Hydrophobic interactions: B:I.52, B:T.100, B:P.103, D:Y.497, D:Y.497, D:V.500 Water bridges: B:E.77 Hydrogen bonds: D:S.416, D:F.417, D:Q.440, D:M.442, D:G.466, D:D.467, D:G.468, D:G.469, D:N.498, D:M.499

2 x 65S: 3-fluoro-2-oxopropanoic acid(Non-covalent)

65S.8: 8 residues within 4Å: Chain B: G.278, R.279, Q.286, R.372, A.422, R.423, L.425, Y.426 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.279 Salt bridges: B:R.279, B:R.372 65S.16: 8 residues within 4Å: Chain D: G.278, R.279, Q.286, R.372, A.422, R.423, L.425, Y.426 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.279 Water bridges: D:Y.262 Salt bridges: D:R.279, D:R.372

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Latta, A.J. et al., Characterization of Acetolactate Synthase from Klebsiella pneumoniae. To Be Published

Release Date

2016-09-28

Peptides

Acetolactate synthase, catabolic: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Acetolactate synthase, catabolic

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