SMTL ID : 5dxv.1 (1 other biounit)

Crystal structure of Rethreaded DHFR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 20 residues within 4Å: Chain A: A.7, A.8, T.18, G.61, R.62, H.63, T.64, L.80, S.81, S.82, K.94, S.95, I.112, G.113, G.114, G.115, R.116, V.117, Y.118, Q.120 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:A.8, A:A.8, A:G.61, A:G.61, A:R.62, A:R.62, A:H.63, A:H.63, A:T.64, A:S.81, A:S.82, A:G.114, A:G.115, A:R.116, A:V.117, A:Q.120, A:Q.120 Water bridges: A:S.82, A:V.96 Salt bridges: A:R.62, A:H.63, A:H.63 pi-Stacking: A:Y.118

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: L.46, F.49 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: A.47, R.51 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: Y.23, E.24, W.28 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agah, S. et al., Protein rethreading: A novel approach to protein design. Sci Rep (2016)

Release Date

2016-06-08

Peptides

rethreaded DHFR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rethreaded DHFR

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