SMTL ID : 5dxy.1

Crystal structure of Dbr2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: A.25, P.26, L.27, T.28, G.59, Q.101, H.180, H.183, R.232, T.275, C.316, G.317, G.318, F.338, G.339, R.340, F.366, Y.367 Ligands: 5J8.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.27, A:R.340, A:F.366, A:F.366, A:Y.367 Hydrogen bonds: A:P.26, A:T.28, A:T.28, A:G.59, A:Q.101, A:Q.101, A:R.232, A:R.232, A:G.317, A:G.318, A:G.339, A:R.340 Water bridges: A:Y.319, A:Y.319, A:R.340, A:Y.341 Salt bridges: A:R.340

1 x 5J8: [[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

5J8.2: 13 residues within 4Å: Chain A: T.28, F.69, W.103, H.180, H.183, Y.185, H.239, R.278, R.340, Y.361, R.363, Y.367 Ligands: FMN.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.69 Hydrogen bonds: A:H.180, A:Y.185, A:R.278, A:R.278, A:R.340 Water bridges: A:R.363, A:Y.367 Salt bridges: A:R.278, A:R.340, A:R.363, A:R.363, A:R.363 pi-Cation interactions: A:R.278, A:R.340

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L., The Crystal structure of Dbr2. to be published

Release Date

2016-10-05

Peptides

Artemisinic aldehyde Delta(11(13)) reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Artemisinic aldehyde Delta(11(13)) reductase

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