SMTL ID : 5dz8.1

Streptococcus agalactiae AgI/II polypeptide BspA variable (V) domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-dimer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: K.28, K.30, S.34, F.35 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.30

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 9 residues within 4Å: Chain A: V.4, A.5, F.6, T.29, K.30, P.31, H.59, Y.61 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.6, A:T.29, A:Y.61

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: A.5, F.6, D.7 Ligands: PEG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.6, A:F.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rego, S. et al., Structural and Functional Analysis of Cell Wall-anchored Polypeptide Adhesin BspA in Streptococcus agalactiae. J.Biol.Chem. (2016)

Release Date

2016-06-22

Peptides

BspA (BspA_V): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BspA (BspA_V)