SMTL ID : 5dzk.1 (1 other biounit)

Crystal structure of the active form of the proteolytic complex clpP1 and clpP2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.07 Å

Oligo State

hetero-oligomer

Ligands

14 x BEZ- LEU- LEU: BEZ-LEU-LEU(Non-covalent)

BEZ-LEU-LEU.1: 11 residues within 4Å: Chain A: Q.47, G.81, G.82, F.83, S.110, A.111, P.137, S.138, L.139, I.157, M.164 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.83, A:F.83, A:A.111 Hydrogen bonds: A:S.138 BEZ-LEU-LEU.2: 13 residues within 4Å: Chain B: Q.47, G.81, G.82, F.83, S.110, A.111, H.135, P.137, S.138, L.139, S.140, M.160, M.164 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.83, B:F.83, B:A.111 Hydrogen bonds: B:S.138 BEZ-LEU-LEU.3: 13 residues within 4Å: Chain C: Q.47, G.81, G.82, F.83, S.110, A.111, H.135, P.137, S.138, L.139, I.157, M.160, M.164 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.83, C:A.111 Hydrogen bonds: C:S.138 BEZ-LEU-LEU.4: 13 residues within 4Å: Chain D: Q.47, G.81, G.82, F.83, S.110, A.111, H.135, P.137, S.138, L.139, I.157, M.160, M.164 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.83, D:F.83, D:A.111 Hydrogen bonds: D:S.138 BEZ-LEU-LEU.5: 12 residues within 4Å: Chain E: Q.47, G.81, G.82, F.83, S.110, A.111, H.135, P.137, S.138, L.139, I.157, M.160 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:F.83, E:F.83, E:A.111 Hydrogen bonds: E:S.138 BEZ-LEU-LEU.6: 13 residues within 4Å: Chain F: Q.47, G.81, G.82, F.83, S.110, A.111, H.135, P.137, S.138, L.139, I.157, M.160, M.164 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:F.83, F:F.83, F:A.111 Hydrogen bonds: F:S.138 BEZ-LEU-LEU.7: 12 residues within 4Å: Chain G: Q.47, G.81, F.83, S.110, A.111, H.135, P.137, S.138, L.139, I.157, M.160, M.164 5 PLIP interactions: 5 interactions with chain G Hydrophobic interactions: G:F.83, G:A.111, G:P.137, G:P.137 Hydrogen bonds: G:S.138 BEZ-LEU-LEU.8: 13 residues within 4Å: Chain A: F.147 Chain H: G.68, G.69, S.70, I.71, S.98, M.99, H.123, Q.124, P.125, L.126, F.143, I.146 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain A Hydrophobic interactions: H:F.143, H:I.146, A:F.147 Hydrogen bonds: H:I.71 BEZ-LEU-LEU.9: 15 residues within 4Å: Chain B: F.147 Chain I: G.68, G.69, S.70, I.71, S.98, M.99, H.123, Q.124, P.125, L.126, G.127, F.143, I.146, M.150 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain B Hydrophobic interactions: I:F.143, I:I.146, B:F.147 Hydrogen bonds: I:I.71 BEZ-LEU-LEU.10: 14 residues within 4Å: Chain I: R.119 Chain J: G.68, G.69, S.70, I.71, S.98, M.99, H.123, Q.124, P.125, L.126, G.127, F.143, I.146 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain C Hydrophobic interactions: J:F.143, J:I.146 Hydrogen bonds: J:I.71 pi-Stacking: C:F.147 BEZ-LEU-LEU.11: 16 residues within 4Å: Chain D: F.147 Chain K: E.35, G.68, G.69, S.70, I.71, S.98, M.99, H.123, Q.124, P.125, L.126, G.127, F.143, I.146, M.150 4 PLIP interactions: 3 interactions with chain K, 1 interactions with chain D Hydrophobic interactions: K:F.143, K:I.146, D:F.147 Hydrogen bonds: K:I.71 BEZ-LEU-LEU.12: 12 residues within 4Å: Chain E: F.147 Chain L: G.68, G.69, S.70, I.71, S.98, M.99, H.123, P.125, L.126, F.143, I.146 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain E Hydrophobic interactions: L:F.143, L:I.146, E:F.147 Hydrogen bonds: L:I.71 BEZ-LEU-LEU.13: 12 residues within 4Å: Chain F: F.147 Chain M: G.68, G.69, S.70, I.71, S.98, M.99, H.123, Q.124, P.125, L.126, M.150 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain M Hydrophobic interactions: F:F.147 Hydrogen bonds: M:I.71 BEZ-LEU-LEU.14: 13 residues within 4Å: Chain M: R.119 Chain N: G.68, G.69, S.70, I.71, S.98, M.99, H.123, Q.124, P.125, L.126, F.143, I.146 3 PLIP interactions: 3 interactions with chain N Hydrophobic interactions: N:F.143, N:I.146 Hydrogen bonds: N:I.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Structure and Functional Properties of the Active Form of the Proteolytic Complex, ClpP1P2, from Mycobacterium tuberculosis. J.Biol.Chem. (2016)

Release Date

2016-02-17

Peptides

ATP-dependent Clp protease proteolytic subunit 2: ABCDEFG
ATP-dependent Clp protease proteolytic subunit 1: HIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

ATP-dependent Clp protease proteolytic subunit 2

ATP-dependent Clp protease proteolytic subunit 1

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