SMTL ID : 5dzo.1

Crystal structure of human T-cell immunoglobulin and mucin domain protein 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 9 residues within 4Å: Chain A: N.28, S.31, C.32, S.33, F.35, T.36, C.37, C.84, R.86 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.31, A:S.33, A:C.37, A:R.86, A:R.86 Water bridges: A:Q.38, A:Q.38 NO3.2: 4 residues within 4Å: Chain A: G.91, W.92, F.93, N.94 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.92, A:F.93

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: Y.18, S.19, H.89, M.96 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.19, A:S.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, S. et al., TIM-1 acts a dual-attachment receptor for Ebolavirus by interacting directly with viral GP and the PS on the viral envelope. Protein Cell (2015)

Release Date

2015-11-25

Peptides

Hepatitis A virus cellular receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatitis A virus cellular receptor 1