SMTL ID : 5dzu.1

Structure of potato cathepsin D inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: D.35, S.62, Q.186 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.62, A:Q.186, A:Q.186 Water bridges: A:D.35, A:D.35 GOL.3: 6 residues within 4Å: Chain B: R.23, I.25, D.35, D.58, S.62, Q.186 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.186, B:Q.186 Water bridges: B:D.58, B:S.62

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.17, N.19 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.17

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain B: N.56, I.166, G.169 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, J. et al., Structure of a Kunitz-type potato cathepsin D inhibitor. J.Struct.Biol. (2015)

Release Date

2015-10-21

Peptides

Aspartic protease inhibitor 11: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartic protease inhibitor 11