SMTL ID : 5e1r.2 (1 other biounit)

Crystal structure of pecan (carya illinoinensis) vicilin, a new food allergen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-trimer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: Y.13, C.286, P.287, H.288, H.332 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:Y.13, A:C.286, A:H.288, A:H.332 CU.3: 5 residues within 4Å: Chain B: Y.13, C.286, P.287, H.288, H.332 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:Y.13, B:C.286, B:H.288, B:H.332 CU.5: 4 residues within 4Å: Chain C: Y.13, C.286, H.288, H.332 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:Y.13, C:C.286, C:H.288, C:H.332

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 12 residues within 4Å: Chain A: F.232, N.251, A.253, M.261, H.264, V.271, V.273, I.328, I.336, L.346, V.347, G.348 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.232, A:A.253, A:V.271, A:V.273, A:V.273, A:L.346 Hydrogen bonds: A:N.251 MPD.4: 11 residues within 4Å: Chain B: F.232, N.251, A.253, M.261, H.264, V.271, V.273, I.328, L.346, G.348, R.358 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.232, B:A.253, B:V.271, B:V.273, B:V.273, B:I.328, B:L.346 Hydrogen bonds: B:H.264 MPD.6: 9 residues within 4Å: Chain C: F.232, N.251, M.261, H.264, N.266, V.271, I.328, I.336, R.358 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.232, C:V.271, C:I.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Identification and Characterization of a New Pecan [Carya illinoinensis (Wangenh.) K. Koch] Allergen, Car i 2. J.Agric.Food Chem. (2016)

Release Date

2016-08-10

Peptides

7S vicilin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

7S vicilin

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