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SMTL ID : 5e26.2
(1 other biounit)
Crystal structure of human PANK2: the catalytic core domain in complex with pantothenate and adenosine diphosphate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.14 Å
Oligo State
homo-dimer
Ligands
2 x
ADP
:
ADENOSINE-5'-DIPHOSPHATE
(Non-covalent)
ADP.1:
17 residues within 4Å:
Chain A:
G.16
,
G.17
,
T.18
,
L.19
,
K.21
,
R.83
,
G.188
,
S.189
,
G.212
,
G.213
,
F.216
,
F.228
,
E.229
,
G.318
,
N.319
,
F.320
,
R.322
21
PLIP interactions
:
21 interactions with chain A
Hydrogen bonds:
A:G.17
,
A:T.18
,
A:T.18
,
A:T.18
,
A:L.19
,
A:R.83
,
A:S.189
,
A:G.212
,
A:E.229
,
A:N.319
,
A:N.319
,
A:F.320
,
A:R.322
Water bridges:
A:D.14
,
A:K.21
,
A:K.21
,
A:G.190
,
A:G.352
Salt bridges:
A:K.21
,
A:K.21
pi-Stacking:
A:F.228
ADP.5:
17 residues within 4Å:
Chain B:
G.16
,
G.17
,
T.18
,
L.19
,
K.21
,
R.83
,
G.188
,
S.189
,
G.212
,
G.213
,
F.216
,
F.228
,
E.229
,
G.318
,
N.319
,
F.320
,
R.322
18
PLIP interactions
:
18 interactions with chain B
Hydrogen bonds:
B:G.17
,
B:T.18
,
B:L.19
,
B:L.19
,
B:S.189
,
B:G.212
,
B:E.229
,
B:N.319
,
B:N.319
,
B:F.320
,
B:R.322
Water bridges:
B:D.14
,
B:D.14
,
B:K.21
,
B:K.21
Salt bridges:
B:K.21
,
B:K.21
pi-Stacking:
B:F.228
2 x
PAU
:
PANTOTHENOIC ACID
(Non-covalent)
PAU.2:
11 residues within 4Å:
Chain A:
E.135
,
G.190
,
V.191
,
S.192
,
R.204
,
G.207
,
T.208
,
S.209
Chain B:
Y.255
,
V.265
,
A.266
12
PLIP interactions
:
8 interactions with chain A
,
4 interactions with chain B
Hydrogen bonds:
A:G.190
,
A:V.191
,
A:R.204
,
B:A.266
Water bridges:
A:E.135
,
A:E.135
,
A:G.190
,
A:S.192
,
B:V.265
Salt bridges:
A:R.204
Hydrophobic interactions:
B:Y.255
,
B:A.266
PAU.4:
13 residues within 4Å:
Chain A:
V.247
,
Y.255
,
V.265
,
A.266
Chain B:
E.135
,
G.190
,
V.191
,
S.192
,
R.204
,
G.207
,
T.208
,
S.209
Ligands:
UNX.9
13
PLIP interactions
:
3 interactions with chain A
,
10 interactions with chain B
Hydrophobic interactions:
A:V.247
,
A:Y.255
Hydrogen bonds:
A:A.266
,
B:G.190
,
B:V.191
,
B:R.204
,
B:S.209
Water bridges:
B:E.135
,
B:E.135
,
B:E.135
,
B:G.190
,
B:S.192
Salt bridges:
B:R.204
4 x
UNX
:
UNKNOWN ATOM OR ION
(Non-functional Binders)
UNX.3:
3 residues within 4Å:
Chain A:
Y.255
,
E.256
,
R.257
No protein-ligand interaction detected (PLIP)
UNX.8:
6 residues within 4Å:
Chain A:
I.250
Chain B:
I.15
,
G.16
,
T.86
,
G.114
,
F.118
No protein-ligand interaction detected (PLIP)
UNX.9:
3 residues within 4Å:
Chain B:
R.204
,
G.207
Ligands:
PAU.4
No protein-ligand interaction detected (PLIP)
UNX.10:
0 residues within 4Å:
(No contacts)
No protein-ligand interaction detected (PLIP)
1 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.6:
6 residues within 4Å:
Chain B:
D.147
,
C.157
,
D.175
,
L.176
,
P.179
,
L.346
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:D.175
,
B:L.176
1 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.7:
6 residues within 4Å:
Chain B:
F.8
,
P.9
,
Y.24
,
P.27
,
L.42
,
R.46
Ligand excluded by PLIP
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
LOPPNAU, P. et al., Crystal structure of human PANK2: the catalytic core domain in complex with pantothenate and adenosine diphosphate. to be published
Release Date
2015-10-21
Peptides
Pantothenate kinase 2, mitochondrial:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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Pantothenate kinase 2, mitochondrial
Related Entries With Identical Sequence
5e26.1
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