SMTL ID : 5e2f.1 (1 other biounit)

Crystal Structure of Beta-lactamase class D from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.44, E.45 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.44, A:E.45, H2O.3, H2O.5, H2O.9 CA.2: 1 residues within 4Å: Chain A: D.48 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.48, H2O.2, H2O.7, H2O.8

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: S.127, T.218, G.219, T.220, L.222 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.127, A:T.218, A:T.218, A:T.220 Water bridges: A:T.220 EDO.4: 2 residues within 4Å: Chain A: R.74, G.154 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Beta-lactamase class D from Bacillus subtilis. To Be Published

Release Date

2015-10-14

Peptides

Beta-lactamase YbxI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase YbxI

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