SMTL ID : 5e68.1

High resolution crystal structure of LuxS - Quorum sensor molecular complex from Salmonella typhi at 1.58 Angstroms

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.54, H.58, C.128, H.134 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.54, A:H.58, A:C.128, H2O.4 ZN.3: 4 residues within 4Å: Chain B: H.54, H.58, C.128, H.134 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.54, B:H.58, B:C.128, H2O.5

1 x PAV: (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran(Non-covalent)

PAV.2: 10 residues within 4Å: Chain A: I.53, P.80, M.81, G.82, R.84 Chain B: I.53, P.80, M.81, G.82, R.84 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.53, A:P.80 Hydrogen bonds: A:R.84, B:M.81, B:R.84, B:R.84 Water bridges: A:G.82

1 x MET: METHIONINE(Non-covalent)

MET.4: 10 residues within 4Å: Chain A: L.3, P.80, M.81, Y.88 Chain B: E.57, D.77, I.78, S.79, P.80, E.122 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.57, B:I.78, B:I.78 Hydrophobic interactions: A:L.3, A:Y.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perumal, P. et al., High resolution crystal structure of LuxS - Quorum sensor molecular complex from Salmonella typhi at 1.58 Angstroms. To Be Published

Release Date

2016-10-12

Peptides

S-ribosylhomocysteine lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S-ribosylhomocysteine lyase

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