SMTL ID : 5e6g.3 (2 other biounits)

Crystal Structure of De Novo Designed Protein CA01

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.79 Chain C: R.79 Chain E: R.79 Ligands: PO4.5, PO4.9 7 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C, 3 interactions with chain E Water bridges: A:R.79, C:R.79, E:R.79, E:R.79 Salt bridges: A:R.79, C:R.79, E:R.79 PO4.2: 8 residues within 4Å: Chain B: P.23, R.79 Chain D: P.23, R.79 Chain F: P.23, R.79 Ligands: PO4.6, PO4.10 7 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D, 3 interactions with chain F Water bridges: B:R.79, D:R.79, F:R.79, F:R.79 Salt bridges: B:R.79, D:R.79, F:R.79 PO4.5: 5 residues within 4Å: Chain A: R.79 Chain C: R.79 Chain E: R.79 Ligands: PO4.1, PO4.9 7 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C, 2 interactions with chain E Water bridges: A:R.79, A:R.79, C:R.79, E:R.79 Salt bridges: A:R.79, C:R.79, E:R.79 PO4.6: 8 residues within 4Å: Chain B: P.23, R.79 Chain D: P.23, R.79 Chain F: P.23, R.79 Ligands: PO4.2, PO4.10 7 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D, 2 interactions with chain F Water bridges: B:R.79, B:R.79, D:R.79, F:R.79 Salt bridges: B:R.79, D:R.79, F:R.79 PO4.9: 5 residues within 4Å: Chain A: R.79 Chain C: R.79 Chain E: R.79 Ligands: PO4.1, PO4.5 7 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C, 2 interactions with chain E Water bridges: A:R.79, C:R.79, C:R.79, E:R.79 Salt bridges: A:R.79, C:R.79, E:R.79 PO4.10: 8 residues within 4Å: Chain B: P.23, R.79 Chain D: P.23, R.79 Chain F: P.23, R.79 Ligands: PO4.2, PO4.6 7 PLIP interactions: 2 interactions with chain B, 3 interactions with chain D, 2 interactions with chain F Water bridges: B:R.79, D:R.79, D:R.79, F:R.79 Salt bridges: B:R.79, D:R.79, F:R.79

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: E.42, I.45, R.61, Y.64, L.65 Chain B: Y.64, L.68 Ligands: GOL.4 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.61, B:Y.64 GOL.4: 7 residues within 4Å: Chain A: E.42, Y.64 Chain B: I.45, R.61, Y.64, L.65 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.61, B:R.61 GOL.7: 8 residues within 4Å: Chain C: E.42, I.45, R.61, Y.64, L.65 Chain D: Y.64, L.68 Ligands: GOL.8 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:Y.64, C:R.61 GOL.8: 7 residues within 4Å: Chain C: E.42, Y.64 Chain D: I.45, R.61, Y.64, L.65 Ligands: GOL.7 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.61, D:R.61 GOL.11: 8 residues within 4Å: Chain E: E.42, I.45, R.61, Y.64, L.65 Chain F: Y.64, L.68 Ligands: GOL.12 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:R.61, F:Y.64 GOL.12: 7 residues within 4Å: Chain E: E.42, Y.64 Chain F: I.45, R.61, Y.64, L.65 Ligands: GOL.11 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:R.61, F:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jacobs, T.M. et al., Design of structurally distinct proteins using strategies inspired by evolution. Science (2016)

Release Date

2016-05-18

Peptides

De novo designed protein CA01: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

De novo designed protein CA01

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