SMTL ID : 5e6x.1

Re-refinement of the Crystal Structure of the Plexin-Semaphorin-Integrin Domain/Hybrid Domain/I-EGF1 Segment from the Human Integrin b2 Subunit

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: A.92, N.94, F.124, T.149, Q.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.94, A:Q.151 Water bridges: A:Q.151 NAG.2: 1 residues within 4Å: Chain A: N.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.240 NAG.3: 2 residues within 4Å: Chain A: N.28, N.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.28, A:N.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sen, M. et al., Leukocyte integrin alpha L beta 2 headpiece structures: The alpha I domain, the pocket for the internal ligand, and concerted movements of its loops. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-03-02

Peptides

Integrin beta-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Integrin beta-2

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