SMTL ID : 5e72.1

Crystal structure of the archaeal tRNA m2G/m22G10 methyltransferase (aTrm11) in complex with S-adenosyl-L-methionine (SAM) from Thermococcus kodakarensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 20 residues within 4Å: Chain A: I.163, S.164, D.185, P.186, F.187, M.188, G.189, G.192, I.193, D.208, I.209, R.210, M.213, G.234, D.235, A.236, T.253, D.254, P.256, L.271 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:I.163, A:D.185, A:G.189, A:G.192, A:I.193, A:I.209, A:D.235, A:A.236, A:T.253, A:D.254 Water bridges: A:L.165, A:L.165, A:G.191, A:G.191, A:L.194, A:R.266 pi-Stacking: A:F.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirata, A. et al., Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules. Nucleic Acids Res. (2016)

Release Date

2016-07-06

Peptides

N2, N2-dimethylguanosine tRNA methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N2, N2-dimethylguanosine tRNA methyltransferase

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