SMTL ID : 5e75.1

Crystal structure of Bacova_02651

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 8 residues within 4Å: Chain A: D.287, Q.290, Q.291, R.409, R.412, Y.439, N.442, Q.443 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.291 Water bridges: A:Y.439

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: C.119, F.122, Y.123, R.126, I.186, K.189, I.357 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.119, A:Y.123, A:R.126, A:R.126, A:K.189 EDO.3: 7 residues within 4Å: Chain A: W.76, Y.80, I.132, I.134, L.140, D.501, L.508 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.76 EDO.4: 12 residues within 4Å: Chain A: V.41, P.42, G.46, M.51, Y.52, S.53, N.56, Y.57, P.58, F.60, V.61, Y.282 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.53, A:S.53

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 4 residues within 4Å: Chain A: K.317, P.338, D.339 Ligands: CL.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.317, A:D.339 TRS.6: 11 residues within 4Å: Chain A: R.47, F.63, Q.64, V.65, T.66, E.491, D.492, F.494, L.495, P.496 Ligands: CL.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.63, A:V.65, A:V.65, A:D.492

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.7: 1 residues within 4Å: Chain A: I.486 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain A: E.152, R.194, W.197 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 7 residues within 4Å: Chain A: G.274, K.317, G.337, P.338, D.339, D.340 Ligands: TRS.5 Ligand excluded by PLIP CL.10: 7 residues within 4Å: Chain A: R.47, F.63, Q.64, V.65, D.492, L.495 Ligands: TRS.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tauzin, A.S. et al., Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont. Mbio (2016)

Release Date

2016-05-04

Peptides

SusD-like protein BACOVA_02651: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SusD-like protein BACOVA_02651