SMTL ID : 5e76.1

Crystal structure of Bacova_02651 with xylogluco-oligosaccharide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- BGC- BGC- BGC- XYS- XYS: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC-BGC-BGC-XYS-XYS.1: 13 residues within 4Å: Chain A: Q.29, R.30, W.47, N.48, Y.49, E.62, W.248, Y.249, N.269, W.271, S.273, Q.340, M.341 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.269, A:Q.340, A:Q.340

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: W.68, Y.72, I.124, I.126, P.136, R.138, D.493, N.497, L.500 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.68, A:R.138, A:D.493 Water bridges: A:R.138 EDO.3: 9 residues within 4Å: Chain A: E.197, L.200, R.204, A.362, C.363, L.364, G.365, N.366, N.367 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.204, A:R.204, A:N.366, A:N.366 Water bridges: A:E.197 EDO.4: 3 residues within 4Å: Chain A: N.367, S.368, T.369 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.367, A:S.368, A:T.369, A:T.369 Water bridges: A:N.366, A:S.368 EDO.5: 7 residues within 4Å: Chain A: N.433, N.434, Q.435, W.436, R.437, Y.439 Ligands: NA.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.436 Water bridges: A:N.433, A:R.437 EDO.6: 6 residues within 4Å: Chain A: G.193, Y.423, L.424, P.425, D.426, K.427 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.426, A:K.427

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 6 residues within 4Å: Chain A: R.39, F.55, Q.56, V.57, D.484, L.487 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.8: 3 residues within 4Å: Chain A: N.433, N.434 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tauzin, A.S. et al., Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont. Mbio (2016)

Release Date

2016-05-11

Peptides

SusD-like protein BACOVA_02651: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SusD-like protein BACOVA_02651