SMTL ID : 5e7q.1

Acyl-CoA synthetase PtmA2 from Streptomyces platensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-dimer

Ligands

19 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.23, R.31, K.234, E.253 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: G.54, R.55 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: W.88, R.89, F.216 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: H.111, Q.112, E.113, H.115 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.352, E.353 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: E.437, R.494, R.500 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: D.57, R.58, H.105 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: R.239, R.240, E.245 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain A: F.223, F.302, A.307, A.308, G.310, F.321 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: N.445, T.446, R.447 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain B: G.54, R.55 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain B: T.23, R.31, K.234, E.253 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: W.88, R.89, F.216 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain B: H.111, Q.112, E.113, H.115 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain B: F.223, A.307, A.308, F.321 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain B: R.239, R.240, E.245 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain B: R.352, E.353 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain B: N.445, T.446, R.447 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain B: E.437, R.494, R.500 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 8 residues within 4Å: Chain A: L.99, D.103, P.104, L.125, D.128, D.129, T.130, A.131 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.103, A:P.104, A:D.129, A:T.130, A:A.131 Water bridges: A:D.103, A:D.128 GOL.21: 8 residues within 4Å: Chain B: L.99, D.103, P.104, D.128, D.129, T.130, A.131, W.133 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.103, B:D.129, B:T.130, B:A.131, B:W.133 Water bridges: B:R.100, B:D.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, N. et al., Natural separation of the acyl-CoA ligase reaction results in a non-adenylating enzyme. Nat. Chem. Biol. (2018)

Release Date

2015-10-21

Peptides

acyl-CoA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

acyl-CoA synthetase