SMTL ID : 5e84.2 (5 other biounits)

ATP-bound state of BiP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 23 residues within 4Å: Chain A: D.11, G.13, T.14, T.15, Y.16, K.73, E.178, G.203, G.204, G.205, A.206, G.232, E.270, K.273, R.274, S.277, G.340, G.341, S.342, R.344, I.345 Ligands: ZN.2, ZN.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:T.14, A:T.14, A:T.15, A:T.15, A:Y.16, A:E.178, A:G.204, A:G.205, A:A.206, A:A.206, A:E.270, A:K.273, A:R.274, A:S.277, A:G.341, A:R.344 Water bridges: A:K.73, A:K.73 Salt bridges: A:K.73

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: D.11 Ligands: ATP.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.11, A:D.11, H2O.1 ZN.3: 5 residues within 4Å: Chain A: E.178, D.201, A.206, D.208 Ligands: ATP.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.178, A:D.201, A:D.208 ZN.7: 1 residues within 4Å: Chain A: D.215 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.215

3 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: D.585, D.588 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.585, A:D.588 MG.5: 2 residues within 4Å: Chain A: E.287, D.294 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.287, A:D.294 MG.6: 1 residues within 4Å: Chain A: E.293 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.293

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain A: E.2, H.144, N.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.2, A:N.171 Salt bridges: A:H.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Close and Allosteric Opening of the Polypeptide-Binding Site in a Human Hsp70 Chaperone BiP. Structure (2015)

Release Date

2016-01-27

Peptides

78 kDa glucose-regulated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

78 kDa glucose-regulated protein

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