- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 6 residues within 4Å:- Chain A: Y.20, N.24, L.28, D.29, L.30, N.63
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.24, A:L.30
EDO.7: 6 residues within 4Å:- Chain A: N.70, E.71, E.189
- Chain B: D.30, G.64, T.65
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:T.65, B:T.65, A:N.70, A:E.189
- Water bridges: B:D.30, B:T.65, B:K.66
EDO.8: 6 residues within 4Å:- Chain A: F.256, V.260, G.261, T.262
- Chain B: S.21
- Ligands: EDO.11
1 PLIP interactions:1 interactions with chain B- Water bridges: B:L.25
EDO.9: 3 residues within 4Å:- Chain A: R.278, V.279, Y.280
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.279, A:V.279
- Water bridges: A:R.278
EDO.10: 3 residues within 4Å:- Chain A: R.220
- Chain B: L.17, H.18
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.220, A:R.220, B:H.18
EDO.11: 6 residues within 4Å:- Chain A: G.261, T.262, N.285, T.286, D.287
- Ligands: EDO.8
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.262, A:T.286, A:D.287
- Water bridges: A:T.262
EDO.12: 3 residues within 4Å:- Chain A: E.71, Y.144, Y.194
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.71, A:K.78
EDO.13: 5 residues within 4Å:- Chain A: D.241, D.245, P.246, K.337, S.338
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.246
EDO.14: 2 residues within 4Å:- Chain A: E.177, P.181
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.177
EDO.15: 3 residues within 4Å:- Chain A: K.97, R.100, K.101
No protein-ligand interaction detected (PLIP)EDO.16: 0 residues within 4Å:- (No contacts)
1 PLIP interactions:1 interactions with chain A- Water bridges: A:P.331
EDO.17: 4 residues within 4Å:- Chain A: R.327, G.333, L.334, A.372
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.327
EDO.18: 5 residues within 4Å:- Chain A: K.273, H.304, K.308
- Chain B: V.7
- Ligands: NAG-FUC.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.308
EDO.19: 8 residues within 4Å:- Chain A: L.54, C.57, S.58, Y.62, I.64, W.66, S.102, F.104
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.62, A:S.102, A:S.102
EDO.23: 4 residues within 4Å:- Chain A: C.25
- Chain B: P.46, R.49, R.53
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.49, B:R.53
- Water bridges: B:R.53
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, L. et al., Structural characterization of human heparanase reveals insights into substrate recognition. Nat.Struct.Mol.Biol. (2015)
- Release Date
- 2015-11-18
- Peptides
- Heparanase: A
Heparanase: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, L. et al., Structural characterization of human heparanase reveals insights into substrate recognition. Nat.Struct.Mol.Biol. (2015)
- Release Date
- 2015-11-18
- Peptides
- Heparanase: A
Heparanase: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B